Solutions in small conical flasks, or dried down fractions in vials, are kept in a fridge. Not only is it dark in the fridge (yes the light does go off when you shut the door), but it is also cold. As you know, reactions happen at a much slower rate at low temperatures, so any potential reactions that could occur will hopefully be slowed right down.Larger conical flasks containing solutions are kept in a dark cupboard.
Sometimes when large volumes of solution are being passed through a column, the column is left to run for quite a long period of time. To keep light out the whole apparatus is wrapped in tinfoil.
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